`rna_library.processing.process_histos`¶

Module Contents¶

`process_histos`(mut_hist_file, output_directory, remove_html = True)	Processes a mutational histogram file generated by dreem.
`build_react_df`(**kwargs)	Builds the reactivity dataframe from the supplied arguments. Here each row reprsents a construct.
`build_motif_df`(df)	Function that creates a motif dataframe from a reactivity dataframe. Here each row represents a Motif.

rna_library.processing.process_histos.process_histos(mut_hist_file, output_directory, remove_html=True)¶

Processes a mutational histogram file generated by dreem.

Param

str mut_hist_file: path to the mutational histogram file

Param

str output_directory: the output directory for the analysis files

Param

bool remove_html: flag to remove .html files generated by DREEM, defaults to True

Parameters

Return type

None

rna_library.processing.process_histos.build_react_df(**kwargs)¶

Builds the reactivity dataframe from the supplied arguments. Here each row reprsents a construct.: Note that all arguments are supplied as kwargs.

Params: str out_dir: base output directory where rna_library.process_histos was called :params: str start_seq: common start sequence for the RNA constructs
Params: str end_seq: common end sequence for the RNA constructs
Params: str fasta_file: path to the fast file for the construct
Params: str histos_file: path to histogram file from DREEM analysis :rtype: pd.DataFrame
Return type: pandas.DataFrame

rna_library.processing.process_histos.build_motif_df(df)¶

Function that creates a motif dataframe from a reactivity dataframe. Here each row represents a Motif.

Param: pd.DataFrame df: reactivity dataframe which is generated from build_react_df() :rtype: pd.DataFrame
Parameters: df (pandas.DataFrame) –
Return type: pandas.DataFrame