`rna_library.processing.junction_data`¶

Contains the JunctionEntry and JunctionData objects

Module Contents¶

`JunctionEntry`	Represents a single junction entry from an RNA construct
`JunctionData`	Composite class that represents a collection of JunctionEntry objects in an experiment.

class rna_library.processing.junction_data.JunctionEntry(**kwargs)¶

Represents a single junction entry from an RNA construct

validate_arguments_(self)¶: Helper method that validates arguments in the constructor.

key(self)¶

Getter that accesses the (sequence, structure) key for the JunctionEntry

is_symmetrical(self)¶

Getter that checks if the JunctionEntry is for a symmetrical unction.

__getitem__(self, idx)¶

class rna_library.processing.junction_data.JunctionData(**kwargs)¶

Composite class that represents a collection of JunctionEntry objects in an experiment.

rebuild_data(self)¶

Method that rebuilds the internal data representation from the JunctionEntry objects.

is_symmetrical(self)¶: Getter that tells if the current JunctionData object models a symmetrical junction. :rtype: bool

plot(self, plot_dir, overwrite=False)¶

Method that saves a plot of the JunctionData’s data points to the supplied directory.

Param: str plot_dir: The directory where the plot will be saved. Does not have to exist.
Return type: NoneType
Parameters: plot_dir (str) –

show(self)¶

Method that brings up a plot of the JunctionData’s data points

bind(self, ax)¶

Method that binds the JunctionData points to a supplied matplotlib Axes object.

Param: matplotlib.axes.Axes ax: the Axes object which the plot will be bound to
Return type: NoneType
Parameters: ax (matplotlib.axes.Axes) –

measure_variance(self)¶